CDS

Accession Number TCMCG051C06008
gbkey CDS
Protein Id XP_024449879.1
Location complement(210073..213612)
Gene LOC7471740
GeneID 7471740
Organism Populus trichocarpa

Protein

Length 1179aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA17973
db_source XM_024594111.1
Definition DEAD-box ATP-dependent RNA helicase 42 isoform X1 [Populus trichocarpa]

EGGNOG-MAPPER Annotation

COG_category A
Description DEAD-box ATP-dependent RNA helicase
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko03041        [VIEW IN KEGG]
KEGG_ko ko:K12811        [VIEW IN KEGG]
EC 3.6.4.13        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway ko03040        [VIEW IN KEGG]
map03040        [VIEW IN KEGG]
GOs GO:0000375        [VIEW IN EMBL-EBI]
GO:0000377        [VIEW IN EMBL-EBI]
GO:0000398        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003724        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0004004        [VIEW IN EMBL-EBI]
GO:0004386        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005730        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006396        [VIEW IN EMBL-EBI]
GO:0006397        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0008026        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008186        [VIEW IN EMBL-EBI]
GO:0008380        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0010468        [VIEW IN EMBL-EBI]
GO:0010501        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016071        [VIEW IN EMBL-EBI]
GO:0016462        [VIEW IN EMBL-EBI]
GO:0016787        [VIEW IN EMBL-EBI]
GO:0016817        [VIEW IN EMBL-EBI]
GO:0016818        [VIEW IN EMBL-EBI]
GO:0016887        [VIEW IN EMBL-EBI]
GO:0017111        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0042623        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043228        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043232        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0070035        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0140098        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGAGGACGTGAAACATAAATCTAGAAAAGATGATTCGGAACGGAAGGAGGACAAAGAGGATTCAAAGAGGAGTCATAGAGACAGGGACAGGGATAGGGACAGGGACAGGGACAGGAATGGAGAGAGGCATCGAGACAGAGAGAAGAGAGAACGTGAAAGCATCAGGCGTTCTGAGAGAGACAAGAGTAGTGATTCTGATGAAAAGGAAAGGGAGAAAGAGAAGCATAAAGACAGGGATAGAGACAGGGATAAGGATAGAGCAGCAAGGAGTAGGGATGGTGATAAAGAGAGAGCTAAGGACAGGAACAGAGATAGAGACAAGGACAGAGAGGAGAAGAAGGATAGGGACAAGGACAGAGAGGAGAAGAGGGATAGGGACAAGGACAGAGAGGAGAAGAGGGAGAGGGCAAAGGAGAAAGAGAAAGATAGGGAAAGGGAAAGGGAAAGGGAAAGGGAGAAGAGGGAACGTGAAAGGGAGAGAGATAGAGAAAGGGAGAGGAAGGAGCGTGACAGAGAAGAAAGGGAGAGGGAGAAGAGGGAGAGAGAAGAAAGGGAGAGGGAGAAGAGGGAGAGAGAAAGGGAGAGGAGGACTAGGGAAAGGGAAAAGTGTAGGGAATTGAGCAGTGACAGTGATGATGATTCCAAGGATCGTGATAAGAAGCGGCGAAGAAGAGATGATGATGACTACAAGGAGAGAGTGCGCGAACAGAGCATTAGCAGGTCAAACAGGCACAGGGATAACAGTGAAGAGATCCCGAGGAAAAAGAGTGACGAGGAGGACTCTGATAAGAATGTGATTAAAACCCGAGAAGAGGAGTTAGAACAGGAGCAGAAGAAATTGGACGAGGAGATGGAGAAGAGGAGGAGGAGAGTCCAGGAATGGCAAGAGCTAAGGAGGAAGAAGGAAGAAACTGAGAGGGAAAAGCATGGGGAAGAAGCTGATGTTAATGAACCCAAGACTGGTAAAACCTGGACTCTTGAAGGAGAATCCGACGATGAAGAAGCACCTCCCACCGGAAAATCTGAGACGGATATGGACCTGGAGGAAAATGCAAAACCTGATGAAGAAGTTGAAGATGCAATGGTAGTGGACACTGAGAATGACATCTCTGCTCCACAAAATGAGGATGATGCCGTTAATGGGGATGAGGAAATTGATCCACTTGATGCTTTTATGAATTCTATGGTGTTACCTGAGGTTGAGAAGCTAAACAGTACTCTGGTTACTCATACTGCTGATGACAATAAAACAGACTTGAAGAATAAGGATAAGAAGGAAGAGCGAATCAATGGAGAACAGAGGAAGAAAGGCTCTCACAAATCTCTAGGGAGAATTGTTCCAGGGGAAGATTCTGATTCAGACTATGGGGATCTTGAAAATGGTGAAGATCCTCTAGAAGAGGAGGATGATGACGAGTTCATGAAGAGGGTGAAGAAAACAAAAGCTGAGAAACTGTCCATTGTTGACCACTCAAAGATTGATTACAATCCTTTCCGGAAGAATTTCTATATTGAAGTGAAGGAGATCTCGAGGATGACTCCTGAGGAGGTTGTTGCGTGTAGGAAAGAACTGGAGTTAAAATTACATGGAAAGGATGTGCCAAAACCAATTAAAACCTGGCACCAGACAGGACTCACAAGTAAAATTCTAGAGACGATAAAGAAACTTAATTATGAGAAGCCAATGACAATTCAAGCTCAGGCCCTGCCTATAATCATGAGTGGCCGGGACTGCATAGGCATTGCAAAAACTGGTTCAGGCAAAACCCTTGCGTTTGTGCTGCCAATGCTGAGGCATATCAAGGACCAGCCTCCTGTGGAAGCTGGAGAAGGACCGATTGGGCTTGTAATGGCACCCACAAGGGAGCTTGTGCAGCAGATCCACAGCGATATAAAGAAGTTTGCTAAGGCCCTGAGTATCAGATGTGTGCCTGTTTATGGAGGTTCTGGTGTTGCCCAACAAATTAGTGAATTAAAGCGGGGGACAGAGATAGTTGTCTGTACTCCAGGCAGAATGATTGACATACTGTGCACCAGTGGAGGAAAAATCACTAATCTTCGCAGAGTTACATATCTGGTTATGGATGAAGCTGATCGGATGTTTGACATGGGGTTTGAACCTCAAATCACTAGAATTGTCCAGAATATTCGCCCAGATCGTCAAACTGTACTCTTTTCTGCCACTTTCCCTCGACAGGTTGAAACTTTGGCTCGTAAAGTACTGAACAAACCTGTGGAAATACAGGTCGGTGGGAGGAGTGTGGTGAATAAGGACATCACTCAGCTGGTTGAATTAAGAACAGAAGATCAAAGGTGGCTTAGGCTTTTAGAACTACTTGGTGAATGGTACCAGAAGGGAAAAATTTTGATATTTGTCCAATCACAGGACAAATGTGATTCATTGTTTAGGAACTTACTGAAGTTTGGTTACCCTTGCCTCTCACTTCATGGGGCTAAGGATCAGACAGATCGTGAATCCACCATTTCGGATTTTAAGACCAATGTCTGCAATTTGATGATTGCAACAAGTGTTGCAGCCAGAGGTTTAGACGTGAAGGATCTAGAATTGGTAATCAATTATGATGCTCCAAACCACTATGAGGATTATGTTCACCGTGTTGGTCGGACTGGCCGAGCTGGTCGCAAAGGCTGTGCCATCACATTTATCTCCGAGGATGATGCAAGATATGCACCAGATCTTGTAAAAGCGTTGGAACTCTCTGAGCAAGTTGTTCCACAAGATTTGAAAGCTCTAGCTGATGGTTTTATGGCAAAAGTGAATCAGGGTCTTGAGCAAGCCCATGGAACAGGTTATGGTGGAAGTGGTTTTAAATTCAATGAAGAGGAGGATGAAAAGAGAATGGCGGCAAAGAAAGCACAGGCAAAAGAATATGGCTATGAGGATGAGAAGTCTGATTCAGAAGATGAAGATGAAGTTGTTCGGAAGTCAGTCGGTGACGTCTCACAGCAGACTGCCCTTGCTCAGCAGATAGCTGCTCTTGCTGCTGTCTCAAAAGTCCCCATGCCTGCACCACCAATTTCTCACTCTGTTGCTCAATTGCTTTCTAATGGTGGATTACCTGTTCCTCCCAATCCAGGTCCAGCTGTTGTTTCTGTTACTGGGCTGCCTTTTGTTCCAAATAATGAAGGGGCAGCCAGGGCAGCAGCACTTGCAGCTGCCATGAATTTGCAACACAACCTGGCAAGGATCCAAGCTGATGCAATGCCTGAACATTATGAAGCAGAGCTGGAAATCAATGATTTTCCCCAAAATGCTCGGTGGAAGGTTACCCACAAGGAAACATTGGGCCCAATTTCAGATTGGACTGGGGCTGCCATTACTACCAGGGGGCAGTTTTTTCCACCAGGCAAGGTGCCGGGACCAGGAGAGCGCAAGCTCTACTTGTTCATTGAGGGTCCTACTGAACAGTCTGTCAAGAGAGCTAAAGCTGACCTAAAACGTGTTTTGGAAGACATCACGAACCAGACATACCAACTTCCTGGTGGAACTCAACCAGGAAAATACTCGGTTGTATGA
Protein:  
MEDVKHKSRKDDSERKEDKEDSKRSHRDRDRDRDRDRDRNGERHRDREKRERESIRRSERDKSSDSDEKEREKEKHKDRDRDRDKDRAARSRDGDKERAKDRNRDRDKDREEKKDRDKDREEKRDRDKDREEKRERAKEKEKDREREREREREKRERERERDRERERKERDREEREREKREREEREREKRERERERRTREREKCRELSSDSDDDSKDRDKKRRRRDDDDYKERVREQSISRSNRHRDNSEEIPRKKSDEEDSDKNVIKTREEELEQEQKKLDEEMEKRRRRVQEWQELRRKKEETEREKHGEEADVNEPKTGKTWTLEGESDDEEAPPTGKSETDMDLEENAKPDEEVEDAMVVDTENDISAPQNEDDAVNGDEEIDPLDAFMNSMVLPEVEKLNSTLVTHTADDNKTDLKNKDKKEERINGEQRKKGSHKSLGRIVPGEDSDSDYGDLENGEDPLEEEDDDEFMKRVKKTKAEKLSIVDHSKIDYNPFRKNFYIEVKEISRMTPEEVVACRKELELKLHGKDVPKPIKTWHQTGLTSKILETIKKLNYEKPMTIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVEAGEGPIGLVMAPTRELVQQIHSDIKKFAKALSIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQLVELRTEDQRWLRLLELLGEWYQKGKILIFVQSQDKCDSLFRNLLKFGYPCLSLHGAKDQTDRESTISDFKTNVCNLMIATSVAARGLDVKDLELVINYDAPNHYEDYVHRVGRTGRAGRKGCAITFISEDDARYAPDLVKALELSEQVVPQDLKALADGFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEKRMAAKKAQAKEYGYEDEKSDSEDEDEVVRKSVGDVSQQTALAQQIAALAAVSKVPMPAPPISHSVAQLLSNGGLPVPPNPGPAVVSVTGLPFVPNNEGAARAAALAAAMNLQHNLARIQADAMPEHYEAELEINDFPQNARWKVTHKETLGPISDWTGAAITTRGQFFPPGKVPGPGERKLYLFIEGPTEQSVKRAKADLKRVLEDITNQTYQLPGGTQPGKYSVV